The Search by Peptide allows users to locate complexes in the database using an epitope sequence, a specific protein, a specific virus, or a combination of these. In the Peptide Sequence box, users can enter complete or partial sequences of epitopes. Wild card characters '[]', 'X' and '()' can also be used in this field. See examples below:

CXNCTFWCV _ Specifies a search for a 9mer epitope, where the 2nd position can present any amino acid. The other positions must present specifically the one indicated amino acid, such as a C in the first position.

C[AGPVLIM]NCTFWC[DE] _ Specifies a search for a 9mer epitope, where the 2nd position can present any of the seven amino acids indicated between brackets, and the last position can present either a D or an E.

CVX(6)D _ Specifies a search for a 9mer epitope whose sequence initiates with "CV", presents any other amino acids between the 3rd and the 7th position. The number between parenthesis indicates the number of repetitions of the amino acid indicated right before, in this case, "X".

PEPTIDE SEQUENCE
SOURCE PROTEIN
SOURCE ORGANISM
COMPLEX CODE         
Sequence
Complex Code
Source Protein
Source Organism
ARYAYYLQF 
B2705_0001 
Single stranded DNA-binding protein 
Human herpesvirus 4 (strain B95-8) 
RRRKGWIPL 
B2705_0002 
Probable membrane glycoprotein 
Human herpesvirus 4 (strain B95-8) 
SRYWAIRTR 
B2705_0003 
nucleoprotein 
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 
RRLVVTLQC 
B2705_0004 
Viral interleukin-10 homolog 
Human herpesvirus 4 (strain B95-8) 
RRSFEIKKL 
B2705_0005 
RNA-directed RNA polymerase catalytic subunit 
Influenza A virus (A/X-31(H3N2)) 
RRATAILRK 
B2705_0006 
Polymerase basic protein 2 
Influenza A virus (A/X-31(H3N2)) 
KRYGPALSI 
B2705_0007 
Polymerase basic protein 2 
Influenza A virus (A/X-31(H3N2)) 
FRKAQIQGL 
B2705_0008 
Epstein-Barr nuclear antigen 6 
Human herpesvirus 4 (strain B95-8) 
RRIYDLIEL 
B2705_0009 
Epstein-Barr nuclear antigen 6 
Human herpesvirus 4 (strain B95-8) 
RRKAMFEDI 
B2705_0010 
groE 
Chlamydia trachomatis 
KRPPIFIRR 
B2705_0011 
Epstein-Barr nuclear antigen 3 
Human herpesvirus 4 (strain B95-8) 
HRCQAIRKK 
B2705_0013 
Epstein-Barr nuclear antigen 4 
Human herpesvirus 4 (Epstein-Barr virus) 
YRHKVVKVM 
B2705_0021 
Genome polyprotein 
West Nile virus 
VRMILMTHF 
B2705_0025 
Genome polyprotein 
Hepatitis C virus 
VRMILLTHF 
B2705_0024 
Genome polyprotein 
Hepatitis C virus 
SQLSAPSLK 
B2705_0023 
Genome polyprotein 
Hepatitis C virus 
RRYPDAVYL 
B2705_0020 
Fusion glycoprotein F0 
Measles virus 
RRSRRSLTV 
B2705_0019 
Genome polyprotein 
West Nile virus 
RRRWRRLTV 
B2705_0014 
Latent membrane protein 2 
Human herpesvirus 4 (Epstein Barr virus) 
RRIFDLIEL 
B2705_0018 
Epstein-Barr nuclear antigen 6 
Human herpesvirus 4 (Epstein Barr virus) 
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