The Search by Peptide allows users to locate complexes in the database using an epitope sequence, a specific protein, a specific virus, or a combination of these. In the Peptide Sequence box, users can enter complete or partial sequences of epitopes. Wild card characters '[]', 'X' and '()' can also be used in this field. See examples below:

CXNCTFWCV _ Specifies a search for a 9mer epitope, where the 2nd position can present any amino acid. The other positions must present specifically the one indicated amino acid, such as a C in the first position.

C[AGPVLIM]NCTFWC[DE] _ Specifies a search for a 9mer epitope, where the 2nd position can present any of the seven amino acids indicated between brackets, and the last position can present either a D or an E.

CVX(6)D _ Specifies a search for a 9mer epitope whose sequence initiates with "CV", presents any other amino acids between the 3rd and the 7th position. The number between parenthesis indicates the number of repetitions of the amino acid indicated right before, in this case, "X".

PEPTIDE SEQUENCE
SOURCE PROTEIN
SOURCE ORGANISM
COMPLEX CODE         
Sequence
Complex Code
Source Protein
Source Organism
AFPSFAGL 
H2KB_0001 
16 kDa Protein 
Mycobacterium tuberculosis 
AIVNYANL 
H2KB_0002 
Protein A11 
Vaccinia virus WR 
ANFKFRDL 
H2KB_0003 
14 kDa antigen 
Mycobacterium tuberculosis 
SQTSYQYL 
H2KB_0005 
Glycoprotein polyprotein 
Lymphocytic choriomeningitis virus (strain Armstrong) (clone 53b) 
SSFNNGTL 
H2KB_0006 
RNA-directed RNA polymerase 
Lymphocytic choriomeningitis virus (strain Armstrong) (clone 53b) 
RSIDFERV 
H2KB_0007 
RNA-directed RNA polymerase 
Lymphocytic choriomeningitis virus (strain Armstrong) (clone 53b) 
GPFQSFVS 
H2KB_0008 
RNA-directed RNA polymerase 
Lymphocytic choriomeningitis virus (strain Armstrong) (clone 53b) 
DLMGYIPL 
H2KB_0009 
Genome polyprotein 
Hepatitis C virus (isolate Taiwan) 
DNRQYSFV 
H2KB_0010 
amastigote surface protein-2 
Trypanosoma cruzi 
KNYPFSSI 
H2KB_0011 
amastigote surface protein-2 
Trypanosoma cruzi 
VNHRFTLV 
H2KB_0012 
amastigote surface protein-2 
Trypanosoma cruzi 
NTLVFPLV 
H2KB_0013 
amastigote surface protein-2 
Trypanosoma cruzi 
VNHDFTVV 
H2KB_0014 
surface protein-1 
Trypanosoma cruzi 
GTYHFTKL 
H2KB_0016 
putative omp85 analog 
Chlamydophila pneumoniae TW-183 
LQQRYSRL 
H2KB_0017 
hypothetical protein CpB0609 
Chlamydophila pneumoniae TW-183 
RTFSFQLI 
H2KB_0020 
Nuclear export protein 
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 
MGLIYNRM 
H2KB_0021 
Matrix protein 1 
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 
GCVAYIGI 
H2KB_0023 
Phosphate-binding protein pstS 1 precursor 
Mycobacterium tuberculosis 
INYEYAIV 
H2KB_0024 
Phosphate-binding protein pstS 1 precursor 
Mycobacterium tuberculosis 
GRWTGRCM 
H2KB_0025 
Protein E6 
Human papillomavirus type 16 
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